DNA contaminant removal using NanoLyse
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
fastq
:file
Basecalled reads in FASTQ.GZ format
*.fastq.gz
fasta
A reference fasta file against which to filter.
*.fasta
Reads with contaminants removed in FASTQ format
log
*.log
Log of the Nanolyse run.
versions_nanolyse
${task.process}
:string
The name of the process
nanolyse
The name of the tool
NanoLyse --version 2>&1 | sed -e "s/NanoLyse //g"
:eval
The expression to obtain the version of the tool
versions
